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Mod Organizer 2 - No Tools Detect Mods


tegimaster

Question

I have Mod Organizer, Loot, Wrye Bash, SSEEdit, and FNIS. Everything is installed directly on my C drive, (C:ModOrganizer, C:LOOT, C:Wrye Bash), and I've installed everything as per standard install, just like I always have in the past. Mod organizer is being run as a portable program. The game itself is in the steamapps folder, but supposedly that should not be an issue. But this time, every single tool cannot see any of the 150+ mods I have installed. They only see the DLC. I found lots of people with this problem on various forums all over, dating back to last year, but all the fixes provided then did not work.

 

I am running the latest version of Windows 10. UAC is not an issue because all my programs are outside of Program Files, and UAC is turned off anyways. My antivirus is not an issue, I tried it with Windows Defender turned off, same problem. 

 

I tried all sorts of arguments, such as "--game=Skyrim Special Edition", "\"--game=Skyrim Special Edition"\", and "\\"--game=Skyrim Special Edition"\\" for loot, and -g "Skyrim Special Edition" for Wrye Bash. None of them worked, and some of them just opened Chrome, saying this site cannot be reached, cuz it tries to open a web page at https://%22--game%3Dskyrim%20special%20edition%22/.

 

I was able to get my mods sorted via the built in mini-loot, even though lootcli.exe crashed with exit code 3221226356.

 

But I still can't get Wrye Bash or FNIS to do anything with my built in mods. Even SSEEdit won't see my mods, but that doesn't bother me, cuz I only needed to clean the DLC and Update files. But I do need to run FNIS, and I'm pretty sure I need a bashed patch too. 

 

So I ask those who know better than me for help. Is there any way I can get around the tools not seeing my mods? Is there some argument I missed? Or should I abandon the whole prospect and use NMM, and put up with the mess it makes while I wait for a better Mod Organizer to come out?

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[spoiler=mo_interface.log (%appdata% Mod Organizer]12:31:07 [D] start main application
12:31:07 [D] data path: C:/Users/Angela/AppData/Local/ModOrganizer/SkyrimSE
12:31:07 [D] Working directory: C:\ModOrganizer\stylesheets
12:31:07 [D] initializing core
12:31:07 [D] usvfs log messages are written to C:/Users/Angela/AppData/Local/ModOrganizer/SkyrimSE/logs/usvfs-2017-05-12_19-31-07.log
12:31:07 [D] initialize plugins
12:31:07 [D] looking for plugins in C:\ModOrganizer\plugins
12:31:07 [D] loaded plugin "check_fnis.dll"
12:31:07 [D] loaded plugin "diagnose_basic.dll"
12:31:07 [D] loaded plugin "game_fallout3.dll"
12:31:07 [D] loaded plugin "game_fallout4.dll"
12:31:07 [D] loaded plugin "game_falloutNV.dll"
12:31:07 [D] loaded plugin "game_oblivion.dll"
12:31:07 [D] loaded plugin "game_skyrim.dll"
12:31:07 [D] loaded plugin "game_skyrimse.dll"
12:31:07 [D] loaded plugin "inieditor.dll"
12:31:07 [D] loaded plugin "installer_bain.dll"
12:31:07 [D] loaded plugin "installer_bundle.dll"
12:31:07 [D] loaded plugin "installer_fomod.dll"
12:31:07 [D] loaded plugin "installer_manual.dll"
12:31:07 [D] loaded plugin "installer_ncc.dll"
12:31:07 [D] loaded plugin "installer_quick.dll"
12:31:07 [D] loaded plugin "pyCfg.py"
12:31:07 [D] loaded plugin "plugin_python.dll"
12:31:07 [D] loaded plugin "preview_base.dll"
12:31:08 [D] no plugin splash
12:31:09 [D] managing game at C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition
12:31:09 [D] setting up configured executables
12:31:09 [D] no configured profile
12:31:09 [D] C:\Users\Angela\AppData\Local\ModOrganizer\SkyrimSE\profiles\Default\modlist.txt saved
12:31:09 [D] validating login cookies
12:31:09 [D] initializing tutorials
12:31:09 [D] loaded language en-US
12:31:09 [D] interface Ethernet seems to be up (address: fe80::a89d:c469:4534:33b4%6)
12:31:09 [D] reading save games from C:/Users/Angela/Documents/My Games/Skyrim Special Edition/Saves
12:31:09 [D] displaying main window
12:31:09 [D] retrieving credentials
12:31:13 [D] save C:/Users/Angela/AppData/Local/ModOrganizer/SkyrimSE/webcache/cookies.dat
12:31:13 [D] C:\Users\Angela\AppData\Local\ModOrganizer\SkyrimSE\profiles\Default\initweaks.ini saved
12:31:13 [D] C:\Users\Angela\AppData\Local\ModOrganizer\SkyrimSE\profiles\Default\plugins.txt saved
12:31:13 [D] C:\Users\Angela\AppData\Local\ModOrganizer\SkyrimSE\profiles\Default\loadorder.txt saved
12:31:13 [D] C:\Users\Angela\AppData\Local\ModOrganizer\SkyrimSE\profiles\Default\lockedorder.txt saved
12:31:16 [D] save C:/ModOrganizer/webcache/nexus_cookies.dat

 

 

The other log "usvfs-2017-05-12_19-31-07.log" in %appdata% Mod Organizer is empty.

 

[spoiler=CEFDebugLog.txt (%appdata% LOOT)][0512/212814:ERROR:main_delegate.cc(752)] Could not load cef_extensions.pak

 

 

[spoiler=LOOTDebugLog.txt (%appdata% LOOT)][21:28:15] [warning]: Blocking load of resource at https://fonts.googleapis.com/css?family=Roboto:400,300,300italic,400italic,500,500italic,700,700italic
[21:28:15] [warning]: Blocking load of resource at https://fonts.googleapis.com/css?family=Roboto+Mono:400,700

 

 

[spoiler=BashBugDump.log (Inside Wrye Bash Portable Folder)]testing UAC

 

 

[spoiler=SSEEdit_log.txt (Inside SSEEdit Folder)]SSEEdit 3.2 starting session 2017-05-10 13:54:42
Using Skyrim Special Edition Data Path: C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition\Data\
Using ini: C:\Users\jtbre\OneDrive\Documents\My Games\Skyrim Special Edition\Skyrim.ini
Using save path: C:\Users\jtbre\OneDrive\Documents\My Games\Skyrim Special Edition\Saves\
Using plugin list: C:\Users\jtbre\AppData\Local\Skyrim Special Edition\Plugins.txt
Using settings file: C:\Users\jtbre\AppData\Local\Skyrim Special Edition\Plugins.sseviewsettings
Loading active plugin list: C:\Users\jtbre\AppData\Local\Skyrim Special Edition\Plugins.txt
[00:00] Background Loader: starting...
[00:00] Background Loader: [skyrim - Misc.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Shaders.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Interface.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Animations.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Meshes0.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Meshes1.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Sounds.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Voices_en0.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures0.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures1.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures2.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures3.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures4.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures5.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures6.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures7.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Textures8.bsa] Loading Resources.
[00:00] Background Loader: [skyrim - Patch.bsa] Loading Resources.
[00:00] Background Loader: [C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition\Data\] Setting Resource Path.
[00:00] Background Loader: finished

SSEEdit 3.2 starting session 2017-05-12 21:19:42
Using Skyrim Special Edition Data Path: C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition\Data\
Using ini: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Skyrim.ini
Using save path: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Saves\
Using plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt
Using settings file: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.sseviewsettings
Loading active plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt

SSEEdit 3.2 starting session 2017-05-12 21:19:53
Using Skyrim Special Edition Data Path: C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition\Data\
Using ini: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Skyrim.ini
Using save path: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Saves\
Using plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt
Using settings file: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.sseviewsettings
Loading active plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt

SSEEdit 3.2 starting session 2017-05-12 21:28:30
Using Skyrim Special Edition Data Path: C:\Program Files (x86)\Steam\steamapps\common\Skyrim Special Edition\Data\
Using ini: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Skyrim.ini
Using save path: C:\Users\Angela\Documents\My Games\Skyrim Special Edition\Saves\
Using plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt
Using settings file: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.sseviewsettings
Loading active plugin list: C:\Users\Angela\AppData\Local\Skyrim Special Edition\Plugins.txt

 

 

[spoiler=ModOrganizer.ini][General]
selected_profile=Default
ask_for_nexuspw=true
gameName=Skyrim Special Edition
gamePath=C:\\Program Files (x86)\\Steam\\steamapps\\common\\Skyrim Special Edition
first_start=false
group_state=0
window_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\xff\xff\xff\xf8\xff\xff\xff\xf8\0\0\a\x87\0\0\x4\x8f\0\0\x1\xf1\0\0\0\xe1\0\0\x5\x8e\0\0\x3\xa6\0\0\0\0\x2\0\0\0\a\x80)
window_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x3\xde\0\0\x2\xa8\x1\xff\xff\xff\xff\x1\0\0\0\x1\0)
log_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x2\x62\0\0\0\x64\x1\xff\xff\xff\xff\x1\0\0\0\x2\0)
browser_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\a\x80)
filters_visible=false
selected_executable=6
mod_info_tabs=@ByteArray(\0\0\0\t\0\0\0\xe\0t\0\x61\0\x62\0T\0\x65\0x\0t\0\0\0\f\0t\0\x61\0\x62\0I\0n\0i\0\0\0\x12\0t\0\x61\0\x62\0I\0m\0\x61\0g\0\x65\0s\0\0\0\xe\0t\0\x61\0\x62\0\x45\0S\0P\0s\0\0\0\x18\0t\0\x61\0\x62\0\x43\0o\0n\0\x66\0l\0i\0\x63\0t\0s\0\0\0\x1a\0t\0\x61\0\x62\0\x43\0\x61\0t\0\x65\0g\0o\0r\0i\0\x65\0s\0\0\0\x10\0t\0\x61\0\x62\0N\0\x65\0x\0u\0s\0\0\0\x10\0t\0\x61\0\x62\0N\0o\0t\0\x65\0s\0\0\0\x10\0t\0\x61\0\x62\0\x46\0i\0l\0\x65\0s)
backup_install=false

[PluginPersistance]
Python%20Proxy\tryInit=false

[customExecutables]
1\title=Skyrim Special Edition
1\custom=false
1\toolbar=false
1\ownicon=false
2\title=Skyrim Special Edition Launcher
2\custom=false
2\toolbar=false
2\ownicon=false
size=6
3\title=LOOT
3\custom=true
3\toolbar=false
3\ownicon=false
4\title=Wrye Bash
4\custom=true
4\toolbar=false
4\ownicon=false
4\binary=C:/Wrye Bash/Wrye Bash.exe
4\arguments=
4\workingDirectory=
4\steamAppID=
5\title=SSEEdit
5\custom=true
5\toolbar=false
5\ownicon=false
5\binary=C:/SSEEdit/SSEEdit.exe
5\arguments=
5\workingDirectory=
5\steamAppID=
3\binary=C:/LOOT/Loot.exe
3\arguments=
3\workingDirectory=C:/LOOT
3\steamAppID=
6\title=GenerateFNISforUsers
6\custom=true
6\toolbar=false
6\ownicon=false
6\binary=C:/ModOrganizer/mods/Fores New Idles in Skyrim - FNIS/tools/GenerateFNIS_for_Users/GenerateFNISforUsers.exe
6\arguments=
6\workingDirectory=C:/ModOrganizer/mods/Fores New Idles in Skyrim - FNIS/tools/GenerateFNIS_for_Users
6\steamAppID=

[recentDirectories]
size=2
1\name=editExecutableBinary
1\directory=C:/ModOrganizer/mods/Fores New Idles in Skyrim - FNIS/tools/GenerateFNIS_for_Users
2\name=installMod
2\directory=C:/Users/Angela/Downloads

[geometry]
modList=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\bT\0\0\0\x3\0\0\0\x2\0\0\0\n\0\0\0\x6\0\0\0\n\0\0\0\x4\0\0\0\n\0\0\x4O\0\0\0\b\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x14\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\b\0\0\x1\x15\0\0\0\x1\0\0\0\0\0\0\0P\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x41\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x37\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\x2r\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1)
espList="@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x2\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x2\xde\0\0\0\x4\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x4\0\0\0\xa1\0\0\0\x1\0\0\0\0\0\0\0\x32\0\0\0\x1\0\0\0\0\0\0\0;\0\0\0\x1\0\0\0\0\0\0\x1\xd0\0\0\0\x1\0\0\0\0\0\0\x3\xe8\0)"
dataTree=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x2\xde\0\0\0\x2\x1\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\x90\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x2\0\0\0\xe4\0\0\0\x1\0\0\0\0\0\0\x1\xfa\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1)
downloadView=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x1\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1-\0\0\0\x3\x1\x1\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x3\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x65\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1)

[settings]
language=en_US
log_level=0
compact_downloads=true
meta_downloads=true
use_prereleases=false
nexus_login=true
nexus_username=tegimaster
nexus_password=zdAfZg+ND9I+JemoL3rO
offline_mode=false
use_proxy=false
load_mechanism=0
nmm_version=0.61.13
hide_unchecked_plugins=false
force_enable_core_files=true
display_foreign=true

[Plugins]
Basic%20diagnosis%20plugin\check_conflict=true
Basic%20diagnosis%20plugin\check_errorlog=true
Basic%20diagnosis%20plugin\check_font=true
Basic%20diagnosis%20plugin\check_missingmasters=true
Basic%20diagnosis%20plugin\check_overwrite=true
Basic%20diagnosis%20plugin\ow_ignore_empty=false
Basic%20diagnosis%20plugin\ow_ignore_log=false
FNIS%20Checker\enabled=false
FNIS%20Checker\sensitive=false
Fomod%20Installer\enabled=true
Fomod%20Installer\prefer=true
Fomod%20Installer\see_disabled_mods=false
Fomod%20Installer\use_any_file=false
INI%20Editor\associated=true
INI%20Editor\external=false
Python%20Proxy\enabled=true
Python%20Proxy\python_dir=
Simple%20Installer\enabled=true
Simple%20Installer\silent=false

[pluginBlacklist]
size=0

[servers]
CDN=@Variant(\0\0\0\b\0\0\0\x5\0\0\0\xe\0p\0r\0\x65\0m\0i\0u\0m\0\0\0\x1\0\0\0\0\x12\0p\0r\0\x65\0\x66\0\x65\0r\0r\0\x65\0\x64\0\0\0\x2\0\0\0\0\0\0\0\x10\0l\0\x61\0s\0t\0S\0\x65\0\x65\0n\0\0\0\xe\0%\x81\x1e\0\0\0\x1a\0\x64\0o\0w\0n\0l\0o\0\x61\0\x64\0S\0p\0\x65\0\x65\0\x64\0\0\0\x6\x41\x8dV\r\x10\0\0\0\0\0\0\x1a\0\x64\0o\0w\0n\0l\0o\0\x61\0\x64\0\x43\0o\0u\0n\0t\0\0\0\x2\0\0\0\x43)

[CompletedWindowTutorials]
InstallDialog=true

 

 

 

If I missed an .ini or log file, let me know and I'll get it up here post haste.

 

Edit: I forgot to give other specifics, Windows 10 Pro 1703, and when FNIS fails, it says "ERROR(2012): Could not generate: defaultfemale.hkx defaultmale.hkx 0_master.hkx."

Edited by tegimaster
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These are how the arguments should look for those tools:

nb. my paths are different, this is just to show which tool is referenced.

4\binary=D:/Games/Utils/LOOT/LOOT.exe
4\arguments="\"--game=Skyrim Special Edition\""


6\binary=D:/Games/Utils/WryeBASH/Wrye Bash.exe
6\arguments=-g \"skyrim special edition\"


7\binary=D:/Games/Utils/xEdit/xEdit.exe
7\arguments=-sse
(technically the last one is not needed as you already have it named in the binary field. This is just if you use the name 'xEdit' instead of 'SSEEdit')
 
This sentence:

 

 

 None of them worked, and some of them just opened Chrome, saying this site cannot be reached, cuz it tries to open a web page at https://%22--game%3Dskyrim%20special%20edition%22/.

makes me think you added the arguments to the 'binary' field.

 
As for FNIS, is this the SSE version or are you using the version for classic Skyrim?

 

Is this computer used by two or more users? Your xEdit logs show paths to 2 different user paths and one of them is to an OneDrive folder. That may cause issue if software is needed to create that folder. MO, and MO2, often are flagged as malware by certain tools and refused access to those locations.

 

All other logs show no issues.

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I am the only user, but I do have Onedrive installed and my documents folder is merged with it, to ensure my games are always backed up, amoung other things. I got this version of Mod Organzier of the Special Edition Nexus, so I'm pretty sure I have the right one. As far as I know, Windows Defender has not flagged anything as malware, as I have recieved no warnings during any of the the tools or programs installations, or while running them, and I have no history of that in the antivirus logs either. 

 

Sorry for the late reply, I've had a pretty hectic and stressful week. When I get back to having time to play again, I'll look into that 2 path issue in the xEdit logs, and get back here with the results of my investigation.

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Funny thing is, I've been trying to work out the problem for a week. I decided to try uninstalling Creation kit and reinstalling MO2 (I reinstalled MO2 several times before and didn't work). As well I decided to uninstall all the C++ versions on my computer ( I had 2005, 2010, 2013 and 2015 64bit and 32bit) and just installed the 2013 and 2017 versions. Again I tried reinstalling all my C++ programs before it hadn't worked with the difference being I left out some older versions and the 2015 version. I posted here thinking that my latest effort hadn't worked after testing. After seeing your post, I decided to turn my computer on to ge the logs and ini for you, and found that my tools were now detecting the mods. I reinstalled CK to see if that would effect it ( I saw someone post saying the CK was the cause in another post) and its all working fine now. Maybe you smarter guys can figure out why its working now.

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Bumping the thread, having the same issue. Tried reinstalling Skyrim, LOOT, MO2, but nothing works. Mods show up in MO2, but not in LOOT or in the game even though I'm launching them from MO. Everything was working perfectly yesterday, but not today.

 

My usvfs logs are completely empty, 

 

[spoiler=mo_interface.log]18:24:09 [D] Starting Mod Organizer version 2.1.3 revision 886fb10
18:24:09 [D] ssl support: 1
18:24:09 [D] data path: D:/Mod Organizer 2
18:24:09 [D] Working directory: D:\Mod Organizer 2
18:24:09 [D] Loaded settings:
18:24:09 [D] initializing core
18:24:09 [D] usvfs log messages are written to D:/Mod Organizer 2/logs/usvfs-2018-06-15_15-24-09.log
18:24:09 [D] Initializing VFS
18:24:09 [D] initialize plugins
18:24:09 [D] looking for plugins in D:\Mod Organizer 2\plugins
18:24:09 [D] loaded plugin "bsa_extractor.dll"
18:24:09 [D] loaded plugin "check_fnis.dll"
18:24:09 [D] loaded plugin "diagnose_basic.dll"
18:24:09 [D] loaded plugin "game_fallout3.dll"
18:24:09 [D] loaded plugin "game_fallout4.dll"
18:24:09 [D] loaded plugin "game_fallout4vr.dll"
18:24:09 [D] loaded plugin "game_falloutNV.dll"
18:24:09 [D] loaded plugin "game_morrowind.dll"
18:24:09 [D] loaded plugin "game_oblivion.dll"
18:24:09 [D] loaded plugin "game_skyrim.dll"
18:24:09 [D] loaded plugin "game_skyrimse.dll"
18:24:09 [D] loaded plugin "game_skyrimvr.dll"
18:24:09 [D] loaded plugin "game_ttw.dll"
18:24:09 [D] loaded plugin "inibakery.dll"
18:24:09 [D] loaded plugin "inieditor.dll"
18:24:09 [D] loaded plugin "installer_bain.dll"
18:24:09 [D] loaded plugin "installer_bundle.dll"
18:24:09 [D] loaded plugin "installer_fomod.dll"
18:24:09 [D] loaded plugin "installer_manual.dll"
18:24:09 [D] loaded plugin "installer_ncc.dll"
18:24:09 [D] loaded plugin "installer_quick.dll"
18:24:09 [D] loaded plugin "pyCfg.py"
18:24:09 [D] loaded plugin "plugin_python.dll"
18:24:09 [D] loaded plugin "preview_base.dll"
18:24:09 [D] no plugin splash
18:24:09 [D] managing game at D:\SteamLibrary\steamapps\common\Skyrim
18:24:09 [D] setting up configured executables
18:24:09 [D] configured profile: Default
18:24:09 [D] initializing tutorials
18:24:10 [D] loaded language en-US
18:24:10 [D] interface Ethernet seems to be up (address: fe80::b42a:b7b7:f7d3:c043%ethernet_32769)
18:24:10 [D] reading save games from C:/Users/Lassi/Documents/My Games/Skyrim/Saves
18:24:10 [D] displaying main window
18:24:10 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:24:11 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:24:18 [D] D:\Mod Organizer 2\profiles\Default\initweaks.ini saved
18:24:18 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:24:18 [D] D:\Mod Organizer 2\profiles\Default\loadorder.txt saved
18:24:18 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:24:18 [D] Load Mechanism: Mod Organizer
18:24:18 [D] USVFS DLL Name: usvfs_x86.dll
18:24:18 [D] enable local saves: 0
18:24:18 [D] Updating VFS mappings...
18:24:19 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:24:19 [D] VFS mappings updated
18:24:19 [D] Spawning direct process < "C:/Program Files (x86)/LOOT/Loot.exe" , "--game=\"Skyrim\"" , "C:/Program Files (x86)/LOOT" >
18:24:20 [D] Waiting for spawned process completion : LOOT.exe (2128)
18:24:27 [D] Waiting for process completion successfull
18:24:28 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:24:28 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:24:28 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:26:26 [D] QWindowsNativeFileDialogBase::onSelectionChange () 0
18:26:28 [D] QWindowsNativeFileDialogBase::onSelectionChange (QUrl("file:///D:/Mod Organizer 2")) 1
18:26:29 [D] QWindowsNativeFileDialogBase::onSelectionChange (QUrl("file:///D:/LOOT")) 1
18:26:29 [D] QWindowsNativeFileDialogBase::onSelectionChange () 0
18:26:31 [D] QWindowsNativeFileDialogBase::onSelectionChange (QUrl("file:///D:/LOOT/LOOT.exe")) 1
18:26:35 [D] QWindowsNativeFileDialogBase::onSelectionChange (QUrl("file:///D:/LOOT")) 1
18:26:44 [D] D:\Mod Organizer 2\profiles\Default\initweaks.ini saved
18:26:44 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:26:44 [D] Load Mechanism: Mod Organizer
18:26:44 [D] USVFS DLL Name: usvfs_x86.dll
18:26:45 [D] enable local saves: 0
18:26:45 [D] Updating VFS mappings...
18:26:46 [D] VFS mappings updated
18:26:46 [D] Spawning direct process < "D:/LOOT/LOOT.exe" , "--game=\"Skyrim\"" , "D:/LOOT" >
18:26:46 [D] Waiting for spawned process completion : LOOT.exe (9532)
18:27:37 [D] Waiting for process completion successfull
18:27:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:27:37 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:27:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:27:47 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:27:47 [D] Updating VFS mappings...
18:27:48 [D] VFS mappings updated
18:27:54 [D] [loot] Found plugin: Dawnguard.esm
18:27:54 [D] [loot] Found plugin: Dragonborn.esm
18:27:54 [D] [loot] Found plugin: HearthFires.esm
18:27:54 [D] [loot] Found plugin: Skyrim.esm
18:27:54 [D] [loot] Found plugin: Update.esm
18:27:54 [D] [loot] Found plugin: WetandCold.esp
18:27:54 [D] [loot] Found plugin: WetandCold - Ashes.esp
18:27:54 [D] [loot] Found plugin: Vivid Landscapes.esp
18:27:54 [D] [loot] Found plugin: VioLens.esp
18:27:54 [D] [loot] Found plugin: Unofficial Skyrim Modders Patch.esp
18:27:54 [D] [loot] Found plugin: Unofficial Skyrim Legendary Edition Patch.esp
18:27:54 [D] [loot] Found plugin: Undeath.esp
18:27:54 [D] [loot] Found plugin: The Honored Dead.esp
18:27:54 [D] [loot] Found plugin: SRG Enhanced Trees Activator.esp
18:27:54 [D] [loot] Found plugin: Sneak Tools.esp
18:27:54 [D] [loot] Found plugin: Sneak Tools Vanilla Masks.esp
18:27:54 [D] [loot] Found plugin: Sneak Tools Vanilla Hoods.esp
18:27:54 [D] [loot] Found plugin: SMIM-Merged-All.esp
18:27:54 [D] [loot] Found plugin: SkyUI.esp
18:27:54 [D] [loot] Found plugin: Skyrim Flora Overhaul.esp
18:27:54 [D] [loot] Found plugin: Skyrim Better Roads and Bridges - All In One - Merged.esp
18:27:54 [D] [loot] Found plugin: SkyFalls + SkyMills + DG + DB.esp
18:27:54 [D] [loot] Found plugin: SFO - Dragonborn.esp
18:27:54 [D] [loot] Found plugin: RevampedExteriorFog.esp
18:27:54 [D] [loot] Found plugin: Remove Interior Fog V2 - Full Version.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo - Waves.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo - Waves - Dawnguard.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo - Legendary.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo - Dragonborn.esp
18:27:54 [D] [loot] Found plugin: RealisticWaterTwo - Dawnguard.esp
18:27:54 [D] [loot] Found plugin: RAIN.esp
18:27:54 [D] [loot] Found plugin: Populated Lands Roads Paths.esp
18:27:54 [D] [loot] Found plugin: Ordinator - Perks of Skyrim.esp
18:27:54 [D] [loot] Found plugin: OBISDB.esp
18:27:54 [D] [loot] Found plugin: OBIS.esp
18:27:54 [D] [loot] Found plugin: mjhKhajiitSpeakMod - Alternate Start.esp
18:27:54 [D] [loot] Found plugin: mjhKhajiitSpeakDLC - Hearthfire.esp
18:27:54 [D] [loot] Found plugin: mjhKhajiitSpeakDLC - Dragonborn.esp
18:27:54 [D] [loot] Found plugin: mjhKhajiitSpeakDLC - Dawnguard.esp
18:27:54 [D] [loot] Found plugin: mjhKhajiitSpeak.esp
18:27:54 [D] [loot] Found plugin: Lanterns Of Skyrim - All In One - Main.esm
18:27:54 [D] [loot] Found plugin: Inigo.esp
18:27:54 [D] [loot] Found plugin: Immersive Weapons.esp
18:27:54 [D] [loot] Found plugin: Immersive Patrols II.esp
18:27:54 [D] [loot] Found plugin: iHUD.esp
18:27:54 [D] [loot] Found plugin: IcePenguinWorldMap.esp
18:27:54 [D] [loot] Found plugin: Hothtrooper44_ArmorCompilation.esp
18:27:54 [D] [loot] Found plugin: Hothtrooper44_Armor_Ecksstra.esp
18:27:54 [D] [loot] Found plugin: Helgen Reborn.esp
18:27:54 [D] [loot] Found plugin: Guard Dialogue Overhaul.esp
18:27:54 [D] [loot] Found plugin: FixedEyeAdaption.esp
18:27:54 [D] [loot] Found plugin: Fantasy Soundtrack Project.esp
18:27:54 [D] [loot] Found plugin: Fantasy Soundtrack Project - Combat.esp
18:27:54 [D] [loot] Found plugin: fallentreebridges.esp
18:27:54 [D] [loot] Found plugin: EnhancedLightsandFX.esp
18:27:54 [D] [loot] Found plugin: DYNAVISION Dynamic Depth of Field.esp
18:27:54 [D] [loot] Found plugin: DSerArcheryGameplayOverhaul.esp
18:27:54 [D] [loot] Found plugin: Differently Ebony.esp
18:27:54 [D] [loot] Found plugin: dD-Larger Splatter Size.esp
18:27:54 [D] [loot] Found plugin: dD-Dragonborn-Dawnguard-EBT Patch.esp
18:27:54 [D] [loot] Found plugin: dD - Enhanced Blood Main.esp
18:27:54 [D] [loot] Found plugin: DCR_KingCrusaderArmor.esp
18:27:54 [D] [loot] Found plugin: Dark Fantasy Overhaul.esp
18:27:54 [D] [loot] Found plugin: Cutting Room Floor.esp
18:27:54 [D] [loot] Found plugin: Cloaks.esp
18:27:54 [D] [loot] Found plugin: ClimatesOfTamriel.esm
18:27:54 [D] [loot] Found plugin: ClimatesOfTamriel-Interiors-Warm.esp
18:27:54 [D] [loot] Found plugin: CL EbonyBladeDagger.esp
18:27:54 [D] [loot] Found plugin: Bells of Skyrim.esp
18:27:54 [D] [loot] Found plugin: BarenziahQuestMarkers.esp
18:27:54 [D] [loot] Found plugin: Animallica.esp
18:27:54 [D] [loot] Found plugin: aMidianborn_Skyforge_Weapons.esp
18:27:54 [D] [loot] Found plugin: AMB Glass Variants Lore.esp
18:27:54 [D] [loot] Found plugin: Alternate Start - Live Another Life.esp
18:27:54 [D] [loot] Found plugin: 3DNPC.esp
18:28:10 [D] [loot] [detail] Done!
18:28:10 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:28:10 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:28:10 [D] D:\Mod Organizer 2\profiles\Default\loadorder.txt saved
18:28:10 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:29:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:37 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:37 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:38 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:29:38 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:38 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:38 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:38 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:29:39 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:39 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:39 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:40 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:40 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:29:40 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\plugins.txt saved
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\archives.txt saved
18:29:40 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:29:40 [D] D:\Mod Organizer 2\profiles\Default\modlist.txt saved
18:30:01 [D] close D:/Mod Organizer 2/profiles/Default/plugins.txt
18:30:09 [D] save D:/Mod Organizer 2/webcache/cookies.dat
18:30:09 [D] D:\Mod Organizer 2\profiles\Default\initweaks.ini saved
18:30:09 [D] D:\Mod Organizer 2\profiles\Default\lockedorder.txt saved
18:30:09 [D] Load Mechanism: Mod Organizer
18:30:09 [D] USVFS DLL Name: usvfs_x86.dll
18:30:09 [D] save D:/Mod Organizer 2/webcache/nexus_cookies.dat

,>

 

 

,>[spoiler=ModOrganizer.ini][General]
gameName=Skyrim
gamePath=D:\\SteamLibrary\\steamapps\\common\\Skyrim
selected_profile=Default
ask_for_nexuspw=true
version=2.1.3
first_start=false
group_state=0
window_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\0\0\x1\xe9\0\0\0\x8b\0\0\x5\x96\0\0\x3w\0\0\x1\xf1\0\0\0\xaa\0\0\x5\x8e\0\0\x3o\0\0\0\0\0\0\0\0\a\x80)
window_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x3\xde\0\0\x2\xa8\x1\xff\xff\xff\xff\x1\0\0\0\x1\0)
log_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x2\x62\0\0\0\x64\x1\xff\xff\xff\xff\x1\0\0\0\x2\0)
browser_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\a\x80)
filters_visible=false
selected_executable=4
mod_info_tabs=@ByteArray(\0\0\0\t\0\0\0\xe\0t\0\x61\0\x62\0T\0\x65\0x\0t\0\0\0\f\0t\0\x61\0\x62\0I\0n\0i\0\0\0\x12\0t\0\x61\0\x62\0I\0m\0\x61\0g\0\x65\0s\0\0\0\xe\0t\0\x61\0\x62\0\x45\0S\0P\0s\0\0\0\x18\0t\0\x61\0\x62\0\x43\0o\0n\0\x66\0l\0i\0\x63\0t\0s\0\0\0\x1a\0t\0\x61\0\x62\0\x43\0\x61\0t\0\x65\0g\0o\0r\0i\0\x65\0s\0\0\0\x10\0t\0\x61\0\x62\0N\0\x65\0x\0u\0s\0\0\0\x10\0t\0\x61\0\x62\0N\0o\0t\0\x65\0s\0\0\0\x10\0t\0\x61\0\x62\0\x46\0i\0l\0\x65\0s)

[PluginPersistance]
Python%20Proxy\tryInit=false

[customExecutables]
1\title=SKSE
1\custom=false
1\toolbar=false
1\ownicon=true
2\title=Skyrim
2\custom=false
2\toolbar=false
2\ownicon=true
3\title=Skyrim Launcher
3\custom=false
3\toolbar=false
3\ownicon=true
4\title=LOOT
4\custom=true
4\toolbar=false
4\ownicon=true
size=4
4\binary=D:/LOOT/LOOT.exe
4\arguments="--game=\"Skyrim\""
4\workingDirectory=D:/LOOT
4\steamAppID=

[recentDirectories]
size=2
1\name=editExecutableBinary
1\directory=D:/LOOT
2\name=editExecutableDirectory
2\directory=D:/

[geometry]
modList=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\b\x1\0\0\0\0\0\0\0\0\0\0\0\t\xb4\0\0\0\0\x4\0\0\0\x2\0\0\0\n\0\0\0\a\0\0\0\n\0\0\0\x4\0\0\0\n\0\0\0\x5\0\0\0\n\0\0\x2\x13\0\0\0\t\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x14\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\t\0\0\x1\x15\0\0\0\x1\0\0\0\0\0\0\0P\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x41\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x37\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x36\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\0\x36)
espList="@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x2\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1Z\0\0\0\x4\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x4\0\0\0\xa1\0\0\0\x1\0\0\0\0\0\0\0\x32\0\0\0\x1\0\0\0\0\0\0\0;\0\0\0\x1\0\0\0\0\0\0\0L\0\0\0\x1\0\0\0\0\0\0\x3\xe8\0\0\0\0L)"
dataTree=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1\xf4\0\0\0\x2\x1\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\x90\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x2\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\x1\x90\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\x1\x90)
downloadView=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\x1\0\0\0\x1\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1-\0\0\0\x3\x1\x1\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x3\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x65\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\0\x64)

 

 

Tell me if I forgot something, I'll post them here then.
 

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The empty uvfs log indicates the hooking process is not working so verify your antivirus software is not interfering with Mod Organizer. Also note that if you run LOOT or the game as administrator, you *must* also run Mod Organizer as an administrator or hooking process will not work -- although I strongly recommend against running anything else administrator.

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I'm also having the same problem, i'm running windows 10. I have MO2 with  LOOT, Wrye Bash, SKSE and TES5edit installed on MO2 and located in C:\Games\Modding\Skyrim Modding, while the game is in  C:\Games\Steamlibrary2 (a copy of the steam library). It's my first time modding and when i set everything and started the game everything worked just fine. Next time i try to play it doesn't work and only detects my DLC.
I have to admit that i went to fast setting the game and left some things to do and i thought this was the problem so i cleaned every folder and reinstalled the game and the programs and this time i think i did everything right but the problem was still there. In MO2  i have my mods installed but LOOT and other programs only detect the DLCs. I have been lurking around and i've already tried some arguments like  "\"--game=Skyrim Special Edition"\" and i also read about the windows game bar messing things around so i tried to disable it and it worked once but the next time it failed and hasn't worked since. 
Maybe you can help me figure this out, here you have my logs:
 
mo_interface.log


 
 
19:05:20 [D] Starting Mod Organizer version 2.1.3 revision 886fb10
19:05:20 [D] ssl support: 1
19:05:20 [D] data path: C:/Games/Modding/Skyrim Modding/Mod Organizer
19:05:21 [D] Working directory: C:\Games\Modding\Skyrim Modding\Mod Organizer
19:05:21 [D] Loaded settings:
19:05:21 [D]   compact_downloads=false
19:05:21 [D]   crash_dumps_max=5
19:05:21 [D]   crash_dumps_type=1
19:05:21 [D]   display_foreign=true
19:05:21 [D]   force_enable_core_files=true
19:05:21 [D]   hide_unchecked_plugins=false
19:05:21 [D]   language=en
19:05:21 [D]   load_mechanism=0
19:05:21 [D]   log_level=1
19:05:21 [D]   meta_downloads=false
19:05:21 [D]   nexus_login=true
19:05:21 [D]   nmm_version=0.65.2
19:05:21 [D]   offline_mode=false
19:05:21 [D]   use_prereleases=false
19:05:21 [D]   use_proxy=false
19:05:21 [D] initializing core
19:05:21 [D] usvfs log messages are written to C:/Games/Modding/Skyrim Modding/Mod Organizer/logs/usvfs-2018-06-15_17-05-21.log
19:05:21 [D] Initializing VFS <mod_organizer_instance, 1, 1, C:/Games/Modding/Skyrim Modding/Mod Organizer/crashDumps>
19:05:21 [D] initialize plugins
19:05:21 [D] looking for plugins in C:\Games\Modding\Skyrim Modding\Mod Organizer\plugins
19:05:21 [D] loaded plugin "bsa_extractor.dll"
19:05:21 [D] loaded plugin "check_fnis.dll"
19:05:21 [D] loaded plugin "diagnose_basic.dll"
19:05:21 [D] loaded plugin "game_fallout3.dll"
19:05:21 [D] loaded plugin "game_fallout4.dll"
19:05:21 [D] loaded plugin "game_fallout4vr.dll"
19:05:21 [D] loaded plugin "game_falloutNV.dll"
19:05:21 [D] loaded plugin "game_morrowind.dll"
19:05:21 [D] loaded plugin "game_oblivion.dll"
19:05:21 [D] loaded plugin "game_skyrim.dll"
19:05:21 [D] loaded plugin "game_skyrimse.dll"
19:05:21 [D] loaded plugin "game_skyrimvr.dll"
19:05:21 [D] loaded plugin "game_ttw.dll"
19:05:21 [D] loaded plugin "inibakery.dll"
19:05:21 [D] loaded plugin "inieditor.dll"
19:05:21 [D] loaded plugin "installer_bain.dll"
19:05:21 [D] loaded plugin "installer_bundle.dll"
19:05:21 [D] loaded plugin "installer_fomod.dll"
19:05:21 [D] loaded plugin "installer_manual.dll"
19:05:21 [D] loaded plugin "installer_ncc.dll"
19:05:21 [D] loaded plugin "installer_quick.dll"
19:05:21 [D] loaded plugin "pyCfg.py"
19:05:21 [D] loaded plugin "plugin_python.dll"
19:05:21 [D] loaded plugin "preview_base.dll"
19:05:21 [D] downloads after refresh: 41
19:05:21 [D] no plugin splash
19:05:21 [D] managing game at C:\Games\Steamlibrary2\steamapps\common\Skyrim
19:05:21 [D] setting up configured executables
19:05:21 [D] configured profile: Default
19:05:21 [D] validating login cookies
19:05:21 [D] initializing tutorials
19:05:22 [D] localization file qt_en not found
19:05:22 [D] localization file qtbase_en not found
19:05:22 [D] localization file organizer_en not found
19:05:22 [D] localization file bsa_extractor_en not found
19:05:22 [D] localization file check_fnis_en not found
19:05:22 [D] localization file diagnose_basic_en not found
19:05:22 [D] localization file game_fallout3_en not found
19:05:22 [D] localization file game_fallout4_en not found
19:05:22 [D] localization file game_fallout4vr_en not found
19:05:22 [D] localization file game_falloutNV_en not found
19:05:22 [D] localization file game_morrowind_en not found
19:05:22 [D] localization file game_oblivion_en not found
19:05:22 [D] localization file game_skyrim_en not found
19:05:22 [D] localization file game_skyrimse_en not found
19:05:22 [D] localization file game_skyrimvr_en not found
19:05:22 [D] localization file game_ttw_en not found
19:05:22 [D] localization file inibakery_en not found
19:05:22 [D] localization file inieditor_en not found
19:05:22 [D] localization file installer_bain_en not found
19:05:22 [D] localization file installer_bundle_en not found
19:05:22 [D] localization file installer_fomod_en not found
19:05:22 [D] localization file installer_manual_en not found
19:05:22 [D] localization file installer_ncc_en not found
19:05:22 [D] localization file installer_quick_en not found
19:05:22 [D] localization file plugin_python_en not found
19:05:22 [D] localization file preview_base_en not found
19:05:22 [D] localization file pyCfg_en not found
19:05:22 [D] loaded language en
19:05:22 [D] interface Wi-Fi seems to be up (address: fe80::5d2a:e7a:3087:9700%wireless_0)
19:05:22 [D] localization file bsa_extractor_en not found
19:05:22 [D] localization file check_fnis_en not found
19:05:22 [D] localization file diagnose_basic_en not found
19:05:22 [D] localization file game_fallout3_en not found
19:05:22 [D] localization file game_fallout4_en not found
19:05:22 [D] localization file game_fallout4vr_en not found
19:05:22 [D] localization file game_falloutNV_en not found
19:05:22 [D] localization file game_morrowind_en not found
19:05:22 [D] localization file game_oblivion_en not found
19:05:22 [D] localization file game_skyrim_en not found
19:05:22 [D] localization file game_skyrimse_en not found
19:05:22 [D] localization file game_skyrimvr_en not found
19:05:22 [D] localization file game_ttw_en not found
19:05:22 [D] localization file inibakery_en not found
19:05:22 [D] localization file inieditor_en not found
19:05:22 [D] localization file installer_bain_en not found
19:05:22 [D] localization file installer_bundle_en not found
19:05:22 [D] localization file installer_fomod_en not found
19:05:22 [D] localization file installer_manual_en not found
19:05:22 [D] localization file installer_ncc_en not found
19:05:22 [D] localization file installer_quick_en not found
19:05:22 [D] localization file plugin_python_en not found
19:05:22 [D] localization file preview_base_en not found
19:05:22 [D] localization file pyCfg_en not found
19:05:22 [D] reading save games from C:/Users/Usuari/Documents/My Games/Skyrim/Saves
19:05:22 [D] displaying main window
19:05:23 [D] close C:/Games/Modding/Skyrim Modding/Mod Organizer/profiles/Default/plugins.txt
19:05:23 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\modlist.txt saved
19:05:23 [D] retrieving credentials
19:05:26 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\initweaks.ini saved
19:05:26 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\plugins.txt saved
19:05:26 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\loadorder.txt saved
19:05:26 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\lockedorder.txt saved
19:05:26 [D] Load Mechanism: Mod Organizer
19:05:26 [D] USVFS DLL Name: usvfs_x86.dll
19:05:27 [D] enable local saves: 0
19:05:27 [D] Updating VFS mappings...
19:05:27 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\archives.txt saved
19:05:28 [D] VFS mappings updated <linked 35 dirs, 4 files>
19:05:28 [D] Spawning direct process < "C:/Games/Modding/Skyrim Modding/LOOT/LOOT.exe" , "--game=\"Skyrim Special Edition\"" , "C:/Games/Modding/Skyrim Modding/LOOT" >
19:05:28 [D] Waiting for spawned process completion : LOOT.exe (8360)
19:05:39 [D] Waiting for process completion successfull
19:05:39 [D] close C:/Games/Modding/Skyrim Modding/Mod Organizer/profiles/Default/plugins.txt
19:05:39 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\lockedorder.txt saved
19:05:39 [D] close C:/Games/Modding/Skyrim Modding/Mod Organizer/profiles/Default/plugins.txt
19:23:44 [D] save C:/Games/Modding/Skyrim Modding/Mod Organizer/webcache/cookies.dat
19:23:44 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\initweaks.ini saved
19:23:44 [D] C:\Games\Modding\Skyrim Modding\Mod Organizer\profiles\Default\lockedorder.txt saved
19:23:44 [D] Load Mechanism: Mod Organizer
19:23:44 [D] USVFS DLL Name: usvfs_x86.dll
19:23:44 [D] save C:/Games/Modding/Skyrim Modding/Mod Organizer/webcache/nexus_cookies.dat


All the usvfs logs are empy except this one:
usvfs-2018-06-15_16-08-26


18:08:28.037 usvfs dll 0.4.0.0 initialized in process 8992
18:08:28.037 [D] remove from process 8992
18:08:28.037 create config in 8992
18:08:28.037 0 processes - 1
18:08:28.732 mod_organizer_instance_1 created in process 8992
18:08:28.732 attached to mod_organizer_instance_1 with 1 nodes, size 65536
18:08:28.732 inv_mod_organizer_instance_1 created in process 8992
18:08:28.732 attached to inv_mod_organizer_instance_1 with 1 nodes, size 65536
18:08:28.732 [D] context current shm: mod_organizer_instance (now 2 connections)
18:10:31.786 mod_organizer_instance_2 created in process 8992
18:10:31.786 tree mod_organizer_instance_2 size now 131072 bytes
18:10:31.883 mod_organizer_instance_3 created in process 8992
18:10:31.883 tree mod_organizer_instance_3 size now 262144 bytes
18:10:31.891 mod_organizer_instance_4 created in process 8992
18:10:31.895 tree mod_organizer_instance_4 size now 524288 bytes
18:10:31.916 mod_organizer_instance_5 created in process 8992
18:10:31.918 tree mod_organizer_instance_5 size now 1048576 bytes
18:10:31.954 mod_organizer_instance_6 created in process 8992
18:10:31.958 tree mod_organizer_instance_6 size now 2097152 bytes
18:10:32.059 mod_organizer_instance_7 created in process 8992
18:10:32.068 tree mod_organizer_instance_7 size now 4194304 bytes
18:10:32.140 mod_organizer_instance_8 created in process 8992
18:10:32.159 tree mod_organizer_instance_8 size now 8388608 bytes
18:10:32.295 mod_organizer_instance_9 created in process 8992
18:10:32.334 tree mod_organizer_instance_9 size now 16777216 bytes
18:10:32.621 mod_organizer_instance_10 created in process 8992
18:10:32.707 tree mod_organizer_instance_10 size now 33554432 bytes
18:10:33.225 injecting to process 13956 with different bitness
18:10:33.226 using usvfs proxy: C:\Games\Modding\Skyrim Modding\Mod Organizer\usvfs_proxy_x86.exe
18:10:33.352 [D] proxy run successful


ModOrganizer.ini


 
[General]
gameName=Skyrim
gamePath=C:\\Games\\Steamlibrary2\\steamapps\\common\\Skyrim
selected_profile=Default
ask_for_nexuspw=true
version=2.1.3
first_start=false
group_state=0
window_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\xff\xff\xff\xf8\xff\xff\xff\xf8\0\0\x5]\0\0\x2\xdf\0\0\x1\x30\0\0\0&\0\0\x4\xcd\0\0\x2\xeb\0\0\0\0\x2\0\0\0\x5V)
window_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x3\xde\0\0\x2\xa8\x1\xff\xff\xff\xff\x1\0\0\0\x1\0)
log_split=@ByteArray(\0\0\0\xff\0\0\0\x1\0\0\0\x2\0\0\x2\x62\0\0\0\x64\x1\xff\xff\xff\xff\x1\0\0\0\x2\0)
browser_geometry=@ByteArray(\x1\xd9\xd0\xcb\0\x2\0\0\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\0\0\x3\xef\0\0\x2\xed\0\0\0\0\0\0\0\0\x5V)
filters_visible=false
selected_executable=4
backup_install=false
 
[PluginPersistance]
Python%20Proxy\tryInit=false
 
[customExecutables]
1\title=SKSE
1\custom=false
1\toolbar=false
1\ownicon=true
2\title=Skyrim
2\custom=false
2\toolbar=false
2\ownicon=true
size=6
3\title=Skyrim Launcher
3\custom=false
3\toolbar=false
3\ownicon=true
4\title=LOOT
4\custom=true
4\toolbar=false
4\ownicon=false
4\binary=C:/Games/Modding/Skyrim Modding/LOOT/LOOT.exe
4\arguments="--game=\"Skyrim Special Edition\""
4\workingDirectory=
4\steamAppID=
5\title=Wrye Bash
5\custom=true
5\toolbar=false
5\ownicon=false
5\binary=C:/Games/Steamlibrary2/Steamapps/common/Skyrim/Mopy/Wrye Bash.exe
5\arguments=-g \"skyrim special edition\"
5\workingDirectory=
5\steamAppID=
6\title=TES5edit
6\custom=true
6\toolbar=false
6\ownicon=false
6\binary=C:/Games/Modding/Skyrim Modding/TES5edit/TES5Edit.exe
6\arguments=
6\workingDirectory=
6\steamAppID=
 
[recentDirectories]
size=2
1\name=editExecutableBinary
1\directory=C:/Games/Modding/Skyrim Modding/TES5edit
2\name=editExecutableDirectory
2\directory=C:/Games/Modding/Skyrim Modding/Mod Organizer
 
[settings]
language=en
compact_downloads=false
meta_downloads=false
use_prereleases=false
log_level=1
crash_dumps_type=1
crash_dumps_max=5
nexus_login=true
nexus_username=melciorpijoan
nexus_password="1IsaKVGzP5VoOOw="
offline_mode=false
use_proxy=false
load_mechanism=0
nmm_version=0.65.2
hide_unchecked_plugins=false
force_enable_core_files=true
display_foreign=true
 
[Plugins]
BSA%20Extractor\enabled=false
Basic%20diagnosis%20plugin\check_alternategames=false
Basic%20diagnosis%20plugin\check_conflict=true
Basic%20diagnosis%20plugin\check_errorlog=true
Basic%20diagnosis%20plugin\check_font=true
Basic%20diagnosis%20plugin\check_missingmasters=true
Basic%20diagnosis%20plugin\check_overwrite=true
Basic%20diagnosis%20plugin\ow_ignore_empty=false
Basic%20diagnosis%20plugin\ow_ignore_log=false
FNIS%20Checker\enabled=false
FNIS%20Checker\sensitive=false
Fomod%20Installer\enabled=true
Fomod%20Installer\prefer=true
Fomod%20Installer\see_disabled_mods=false
Fomod%20Installer\use_any_file=false
INI%20Editor\associated=true
INI%20Editor\external=false
Python%20Proxy\enabled=true
Python%20Proxy\python_dir=
Simple%20Installer\enabled=true
Simple%20Installer\silent=false
 
[pluginBlacklist]
size=0
 
[geometry]
modList=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\b\x1\0\0\0\0\0\0\0\0\0\0\0\t\xb4\0\0\0\0\x4\0\0\0\x2\0\0\0\n\0\0\0\x5\0\0\0\n\0\0\0\x4\0\0\0\n\0\0\0\a\0\0\0\n\0\0\x3\a\0\0\0\t\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x14\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\t\0\0\x1\x15\0\0\0\x1\0\0\0\0\0\0\0P\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x41\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x37\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\x1*\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\0\x36)
espList="@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\0\0\0\0\x2\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1\xfc\0\0\0\x4\x1\x1\0\x1\0\0\0\0\0\0\0\0\x1\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x4\0\0\0\xa1\0\0\0\x1\0\0\0\0\0\0\0\x32\0\0\0\x1\0\0\0\0\0\0\0;\0\0\0\x1\0\0\0\0\0\0\0\xee\0\0\0\x1\0\0\0\0\0\0\x3\xe8\0\0\0\0L)"
dataTree=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1\xf4\0\0\0\x2\x1\0\0\x1\0\0\0\0\0\0\0\0\0\0\0\x1\x90\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x2\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\x1\x90\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\x1\x90)
downloadView=@ByteArray(\0\0\0\xff\0\0\0\0\0\0\0\x1\0\0\0\x1\0\0\0\x1\x1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\x1-\0\0\0\x3\x1\x1\0\x1\0\0\0\0\0\0\0\0\0\0\0\0\x64\xff\xff\xff\xff\0\0\0\x81\0\0\0\0\0\0\0\x3\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x64\0\0\0\x1\0\0\0\0\0\0\0\x65\0\0\0\x1\0\0\0\0\0\0\x3\xe8\x1\0\0\0\x64)
 
[servers]
CDN=@Variant(\0\0\0\b\0\0\0\x5\0\0\0\xe\0p\0r\0\x65\0m\0i\0u\0m\0\0\0\x1\0\0\0\0\x12\0p\0r\0\x65\0\x66\0\x65\0r\0r\0\x65\0\x64\0\0\0\x2\0\0\0\0\0\0\0\x10\0l\0\x61\0s\0t\0S\0\x65\0\x65\0n\0\0\0\xe\0%\x82\xad\0\0\0\x1a\0\x64\0o\0w\0n\0l\0o\0\x61\0\x64\0S\0p\0\x65\0\x65\0\x64\0\0\0\x6\x41q\xa5\x45\x30\0\0\0\0\0\0\x1a\0\x64\0o\0w\0n\0l\0o\0\x61\0\x64\0\x43\0o\0u\0n\0t\0\0\0\x2\0\0\0\x1e)
 
[CompletedWindowTutorials]
InstallDialog=true


Please tell me if there is something wrong and if you need more logs i'll post them here.

Please use spoiler tags:
 

[spoiler]
... paste your text here ...
[/spoiler]
Edited by Greg
Added spoiler tags
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Having an empty uvfs log indicates that the hooking process is not working so verify your antivirus or other software is not interfering with the hooking process. If you are on Windows 10, you may also need to ensure none of the *.exe and *.dll files in the Mod Organizer folder are blocked. Open the Mod Organizer folder in Windows Explorer, right click each file, and select Properties. If you see an Unblock button, click Unblock and click OK to close the dialog.
 
Also note that the hooking process can also fail if you run the game or any tools as an admin from Mod Organizer but Mod Organizer is not run as an admin. This is because Windows refuses to allow a non-admin process to hook an admin process, although you really shouldn't need to run Mod Organizer, the game, or any of the tools as an admin.
 
Also ensure you are at least on Mod Organizer 2.1.13 from Nexus, although you might be interesting in picking up the latest Mod Organizer 2.1.14 dev build from #builds on discord.
 
Your syntax for the parameter to LOOT confuses me. I think it should be more like this in the Arguments textbox:
 

--game="Skyrim Special Editiion"

EDIT: It seems to be correct in your ini file so it may just be the way you typed it in your post that's throwing me off.

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