Ok I'm really confused. I'm trying to do two things at this point. One is to clear the flags in the plug-ins. (I haven't found any information on the tutorials I've poured through, thus far.) The only information I am finding is on overwritten flags. As far as I can tell that's ok. I do want my mod to overwrite the other. But there are a lot of treasure chest/paperclip flags in my plug-ins and I haven't been able to google up anything on why that is. Or how to fix it.
Additionally, I am trying to port in my mods via Workshop by launching Skyrim Launcher (not SSKE). And then waiting for the mods to sync, so I can use the Overwrite feature, and create the mod in my list. However it never seems to happen. And now, I'm having a weird formatting issue, where I can't even get to the overwrite button. I've tried minimizing/maximizing the screen- doesn't fix it. I've tried shutting it down and starting it up again. Doesn't fix it. I've tried using Ctrl - to reduce the size of the screen. Does nothing. It's stuck with the bar being the lowest it will go, and having 'filter' floating where Overwrite should be.
Additionally, if you look at the picture that shows this issue, you'll see in the message screen that it's referring to Fallout. However I don't have this installed in fallout. This is installed into the Skyrim game directory. I have never used this with Fallout. I don't have one single mod installed anywhere on my computer for Fallout. So I am not sure what in the world that is. I don't even have Fallout installed on my computer.
Guys what am I missing?